1. Gunnarsson, E., De, S., Leder, K., and Foo, J. Understanding the role of phenotypic switching in cancer drug resistance (submitted, 2019).

  2. Goldberg EE and Foo, J. Memory in trait macroevolution, in press, American Naturalist, 2019.

  3. Storey K, Leder K, Hawkins-Daarud A, Swanson K, Ahmed A, Rockne R, Foo J. Glioblastoma recurrence and the role of MGMT methylation. JCO Clinical Cancer Informatics. 2019 (3)p. 1-12. Link

  4. Kaveh K, Takahashi Y, Farrar MA, Storme G, Guido M, Piepenburg J, Penning J, Foo J, Leder KZ, Hui SK. Combination therapeutics of Nilotinib and radiation in acute lymphoblastic leukemia as an effective method against drug-resistance. PLoS Computational Biology. 2017 Jul 6;13(7):e1005482. Link

  5. Storey K, Ryser MD, Leder K, Foo J. Spatial measures of genetic heterogeneity during carcinogenesis. Bulletin of Mathematical Biology. 2017 Feb 1;79(2):237-76. PDF

  6. Lindsay, D., Garvey, C., Mumenthaler, S., Foo, J. An evolutionary perspective on cancer treatment response. In: Ujvari B, Roche B, Thomas F, editors. Ecology and Evolution of Cancer. Academic Press; 2017 Feb 8.

  7. He, Q., Zhu, J., Dingli, D., Foo, J., Leder, K. `Optimized treatment schedules for Chronic Myeloid Leukemia,' PLoS Computational Biology (2016) Oct 20;12(10):e1005129. Link

  8. Ryser, M., Lee, W., Ready, N., Leder, K., Foo, J. `Quantifying the Dynamics of Field Cancerization in HPV-Ne gative Head and Neck Cancer: A Multiscale Modeling Approach,' Cancer Research (2016) doi: 10.1158/0008- 5472.CAN-16-1054. Link

  9. Lindsay, D., Garvey, C., Mumenthaler, S., Foo, J. `Leveraging hypoxia-activated prodrugs to prevent drug resistance in solid tumors.' PLoS Computational Biology (2016) Aug 25;12(8):e1005077. Link

  10. Garvey, C., Spiller, E., Lindsay, D., Chiang, C., Choi, N., Agus, D., Mallick, P., Foo, J., Mumenthaler, S.; `An image-based quantitative method for studying tumor cell dynamics driven by evolutionary selective pressures.' Scientific Reports 6 :29752 (2016). Link

  11. Durrett, R., Foo, J., Leder, K.; ‘Cancer initiation in spatially structured tissue,’ Journal of Mathematical Biology, (2016); Vol 72(5): pages 1369-400. PDF

  12. Foo, J., Liu, L., Leder, K., Riester, M., Iwasa, Y., Lengauer, C., Michor, F.; ‘An Evolutionary Approach for Identifying Driver Mutations in Colorectal Cancer,’ PLoS Computational Biology (2015) 11(9): e1004350. Link

  13. Mumenthaler, S., Foo, J., et. al. `The Impact of Microenvironmental Heterogeneity on the Evolution of Drug Resistance in Cancer Cells,' Cancer Informatics (2015) 4 (Suppl 4): 19–31. PDF

  14. Foo, J., Haskell, C., Komarova, N., Segal, R., Wood, K. `Modeling sympatric speciation in quasiperiodic environments,' IMA Volumes in Mathematics and its Applications: Applications of Dynamical Systems in Biology and Medicine, Volume 158, p. 149-174 (2015). PDF

  15. Foo, J., Leder, K., and Zhu, J. `Escape times for branching processes with random mutational fitness effects,' Stochastic Processes and their Applications (2014) Volume 124, Issue 11, p. 3661–3697. PDF

  16. Foo, J., Leder, K., and Ryser, M. `Multifocality and recurrence risk: A quantitative model of field cancerization,' Journal of Theoretical Biology (2014) Vol 355. PDF

  17. Aghili, L., Foo, J., De Gregori, J., and De, S. `The landscape of detectable somatically acquired amplifications and deletions in apparently normal human tissues of cancer patients,' Cell Repts (2014) Vol 7 Issue 4. PDF

  18. Foo, J. and Michor, F. `Evolution of acquired resistance to anti-cancer therapy,' Journal of Theoretical Biology (2014) Vol 355. link

  19. Foo, J. and Leder, K. `Dynamics of cancer recurrence,' Annals of Applied Probability (2013) Vol 23 (4), 1437-1468. PDF

  20. The Physical Sciences-Oncology Center Network (2013) A physical sciences network characterization of nonmalignant and metastatic cells. Scientific Reports 3, 1-12. Link

  21. Foo, J, Leder, K. and Mumenthaler, S. `Cancer as a moving target: Understanding the composition and rebound growth kinetics of recurrent tumors,' Evolutionary Applications (2013) Vol 6(1). Link

  22. Shu, J., Zhilian, X., Liang, E., Slipek, N,. Shen, D., Foo, J., Subramanian, S., Steer, C. `Dose-dependent differential mRNA target selection and regulation by let-7a-7f and miR-17-92 cluster microRNAs,' RNA Biology (2012) Vol 9 (10). Link

  23. Foo, J., Chmielecki, J., Pao, W., Michor, F. `Effects of pharmacokinetic processes and varied dosing schedules on the dynamics of acquired resistance to erlotinib in EGFR-mutant lung cancer,' Journal of Thoracic Oncology (2012) Vol 7 (10). PDF

  24. Tang, M., Foo, J., Gonen, M., Guilhot, J., Mahon, F., Michor, F. `Selection pressure exerted by imatinib therapy leads to disparate outcomes of imatinib discontinuation trals,' Haematalogica (2012) 2012 Vol 97(10). PDF

  25. Mumenthaler S, Foo J, Leder K, et al. `Evolutionary modeling of combination strategies to overcome resistance to tyrosine kinase inhibitors in non-small cell lung cancer,' Mol. Pharm (2011) 8(6). Link

  26. Chmielecki J, Foo J, et al. `Optimization of dosing for EGFR-mutant non-small cell lung cancer with evolutionary cancer modeling,' Science Translational Medicine (2011) Vol 3, Issue 90: 90ra59. Link

  27. Leder, K., Foo, J., Skaggs, B., Gorre, M., Sawyers, C., Michor, F. `Diversity in pre-existing resistance to BCR-ABL inhibitors in Chronic Myeloid Leukemia,' PLoS ONE (2011)e27682. doi:10.1371/journal.pone.0027682. PDF SI

  28. Durrett, R., Foo, J. Leder, K., Mayberry, J., Michor, F. `Intra-tumor heterogeneity in evolutionary models of tumor progression' Genetics (2011) Vol 188 (2): 461-477. PDF

  29. Foo, J., Leder, K., and Michor, F. `Stochastic dynamics of cancer initiation,' Physical Biology (2011) Vol 8: 015002. PDF

  30. Foo, J. and Karniadakis, G. `Multi-Element Probabilistic Collocation in High Dimensions,' Journal of Computational Physics (2010) Vol 229(5): p.1536-1557. PDF

  31. Durrett, R., Foo, J. Leder, K., Mayberry, J., Michor, F. `Evolutionary dynamics of tumor progression with random fitness values' Theoretical Population Biology (2010) Vol 78: p.54-66. PDF

  32. Foo, J. and Michor, F. `Evolution of resistance to targeted anti-cancer therapies during general dosing schedules,' Journal of Theoretical Biology (2010) Vol 263 p. 179-188. PDF

  33. Foo, J. and Michor, F. `Evolution of resistance to targeted anti-cancer therapies during continuous and pulsed administration strategies,' PLoS Computational Biology (2009) 5, e1000557. Link

  34. Foo, J., Drummond, M., Clarkson, B., Holyoake, T., and Michor, F. `Eradication of Chronic Myeloid Leukemia Stem Cells: A Novel Mathematical Model Predicts No Therapeutic Benefit of Adding G-CSF to Imatinib,' PLoS Computational Biology (2009) 5, e10000503. PDF

  35. Foo, J., Sindi, S., and Karniadakis, G. `Using the Multi-Element Probabilistic Collocation Method for Sensitivity Analysis in Cellular Signaling Networks.' Systems Biology (2009) Vol 3(4):239-254. PDF

  36. Foo, J., Wan, X., Karniadakis, G. `A Multi-Element Probabilistic Collocation Method for PDEs with Parametric Uncertainty: Error Analysis and Applications' Journal of Computational Physics (2008) Vol 227: 9572-9595. PDF

  37. Foo, J., Yosibash, Z., Karniadakis, G. `Stochastic Simulation of Riser-Sections with Uncertain Measured Pressure Loads and/or Uncertain Material Properties.' Computer Methods in Applied Mechanics and Engineering (2007) Vol 196: 4250-4271. PDF

  38. Bell, J., Foo, J., and Garcia, A. `Algorithm Refinement for the Stochastic Burgers Equation.' Journal of Computational Physics (2007) Vol 223 : 451-468. PDF

  39. Lucor, D., Foo, J., and Karniadakis, G. `Vortex mode selection of a rigid cylinder subject to VIV at low mass-damping.' Journal of Fluids and Structures (2005) Vol 20: 485-503. PDF

  40. Lucor, D., Foo, J., and Karniadakis, G. `Correlation Length and Force Phasing of a Rigid Cylinder Subject to VIV of Fully Coupled Fluid Structure Interactions.' in Fluid Mechanics and its Applications (2004) Vol 75 : 187-199.